Phyllostachys heterocycla genome wide

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Search Article search Search. Price, A. We then used the standard setting to compute gene similarities across all eight genomes. Because it is difficult to generate an inbred line of moso bamboo, owing to its infrequent sexual reproduction and the long periods of time between flowering intervals, we selected five plants from a single individual rhizome of the moso bamboo ecotype P. Paterson, A.


  • There are a large number of transposable elements in moso bamboo ( Phyllostachys heterocycla var. pubescens) genome, but the. Genome-wide analysis and transcriptomic profiling of the auxin and signaling family genes in moso bamboo (Phyllostachys heterocycla).

    Here, we report a high-quality draft genome sequence of moso bamboo (P. heterocycla var. pubescens).

    The Gb assembly covers 95% of.
    Genetics— Methods 6— Figure 2: Recent duplication and the expression of bamboo CesA and Csl genes. More than bamboo genes were highly expressed in the 2 panicle tissues with at least a 2-fold difference in the expression level in panicles relative to the levels in 5 vegetative tissues; Online Methods. Somerville, C. The genome sequence of black cottonwood Populus trichocarpa reveals 18 conserved cellulose synthase CesA genes.

    images phyllostachys heterocycla genome wide
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    The transposable element—derived genes in the genomes from the PLAZA database were removed before they were added to the alignment.

    Huang, Y. These transcription factors have a variety of important functions in different biological processes in plants.

    Video: Phyllostachys heterocycla genome wide Growing Giant Bamboo from Seed - Phyllostachys pubescens

    Zhu provided IT support. Bioinformatics 21 suppl.

    Request PDF on ResearchGate | Genome-wide identification and characterization of the Dof gene family in moso bamboo (Phyllostachys heterocycla var.

    images phyllostachys heterocycla genome wide

    The Dof (DNA binding with One Finger) family of single zinc finger proteins is a 26 Dof family genes in moso bamboo (Phyllostachys heterocycla var. pubescens).

    images phyllostachys heterocycla genome wide

    first step towards a genome-wide analysis of the Dof genes in moso bamboo. Here, a complete genome-wide identification and characterization of the MADS- box non-timber forest species moso bamboo (Phyllostachys heterocycla).
    This license does not permit commercial exploitation, and derivative works must be licensed under the same or similar license. Advanced search. Variance of family sizes occurred in a large number of gene families in bamboo Supplementary Table Transcriptome sequencing with an amplification-free library preparation method.

    The cellulose synthase superfamily in fully sequenced plants and algae.

    images phyllostachys heterocycla genome wide
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    The average gene number per block was approximately A complete overview of PhDof genes in moso bamboo is presented, including the gene structures, phylogeny, protein motifs and expression patterns.

    Das, M. Nature Genetics menu. Main Bamboo is one of the most important non-timber forest products in the world.

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    1. Genome-wide characterization of the biggest grass, bamboo, based on 10, putative full-length cDNA sequences. Djerbi, S.